Publications

    [2017]

  1. Ranjan Kumar Barman, Anirban Mukhopadhyay, Santasabuj Das. 2017. An improved method for identification of small non-coding RNAs in bacteria using support vector machine. Scientific Reports. PubMed Link

  2. Rahul Shubhra Mandal, Santasabuj Das. 2017. In Silico Approaches Toward Combating Antibiotic Resistance. Springer Nature. Drug Resistance in Bacteria, Fungi, Malaria, and Cancer, 577-593. Bookchapter Link

  3. Rahul S. Mandal, Samiran Panda, Santasabuj Das. 2017. In silico prediction of drug resistance due to S247R mutation of Influenza H1N1 neuraminidase protein. J Biomol Struct Dyn. PubMed Link

  4. [2016]

  5. Ramachandran Muthiyan, Balwin Nambikkairaj, Nilkamal Mahanta1, Titus Immanuel, Rahul S. Mandal, Kubendiran Kumaran, Arun Kumar De. 2016. Antiproliferative and Proapoptotic Activities of Marine Sponge Hyrtios erectus Extract on Breast Carcinoma Cell Line (MCF-7). Pharmacognosy Magazine. (DOI: 10.4103/0973-1296.203983).

  6. Rahul S. Mandal, Atri Ta, Ritam Sinha, Nagaraja Theeya, Anirban Ghosh, Mohsina Tasneem, Anirban Bhunia, Hemanta Koley & Santasabuj Das. 2016. Ribavirin suppresses bacterial virulence by targeting LysR-type transcriptional regulators. Scientific Reports. PubMed Link

  7. Preetida J. Bhetariya, Madhvi Prajapati, Asani Bhaduri, Rahul S. Mandal, Anupam Varma, Taruna Madan, Yogendra Singh and P. Usha Sarma. 2016. Phylogenetic and Structural Analysis of Polyketide Synthases in Aspergilli. Evol Bioinform Online. PubMed Link

  8. [2015]

  9. Banerjee R, Roy A, Das S, Basak S. 2015. Similarity of currently circulating H1N1 virus with the 2009 pandemic clone: viability of an imminent pandemic. Infect Genet Evol. PubMed Link

  10. Gaurab Sircar, Bodhisattwa Saha, Rahul S. Mandal, Naren Pandey, Sudipto Saha, Swati Gupta Bhattacharya. 2015. Purification, Cloning and Immuno-Biochemical Characterization of a Fungal Aspartic Protease Allergen Rhi o 1 from the Airborne Mold Rhizopus oryzae. PLoS One. PubMed Link

  11. Barman RK, Jana T, Das S, Saha S. 2015. Prediction of intra-species protein-protein interactions in enteropathogens facilitating systems biology study. PLoS One; 10(12):e0145648. PubMed Link

  12. Theeya N, Ta A, Das S, Mandal RS, Chakrabarti O, Chakrabarti S, Ghosh AN, Das S. 2015. An Inducible and Secreted Eukaryote-Like Serine/Threonine Kinase of Salmonella enterica Serovar Typhi Promotes Intracellular Survival and Pathogenesis. Infect Immun; 83(2):522-33. PubMed Link

  13. Yadav VK, Mandal RS, Puniya BL, Singh S, Yadav S. 2015. Studies on the interactions of SAP-1 (an N-terminal truncated form of cystatin S) with its binding partners by CD-spectroscopic and molecular docking methods. J Biomol Struct Dyn; 33(1):147-57. PubMed Link

  14. Yadav VK, Mandal RS, Puniya BL, Kumar R, Dey S, Singh S, Yadav S. 2015. Structural and Binding Studies of SAP-1 Protein With Heparin. Chem Biol Drug Des. PubMed Link

  15. Mandal RS, Saha S*, Das S*. 2015. Metagenomic surveys of gut microbiota. Genomics, Proteomics & Bioinformatics.. PubMed Link

  16. [2014]

  17. Barman RK, Saha S, Das S. 2014. Prediction of interactions between viral and host proteins using supervised machine learning methods. PLoS One; 9(11):e112034. PubMed Link

  18. Dhal PK, Barman RK, Saha S, Das S. 2014. Dynamic modularity of host protein interaction networks in Salmonella Typhi infection. PLoS One; 9(8):e104911. PubMed Link

  19. Chowdhury R, Mandal RS, Ta A, Das S. 2014. An AIL family protein promotes type three secretion system-1-independent invasion and pathogenesis of Salmonella enterica serovar Typhi. Cell Microbiol. PubMed Link

  20. Arora G, Tiwari P, Mandal RS, Gupta A, Sharma D, Saha S, Singh R. 2014. High throughput screen identifies small molecule inhibitors specific for Mycobacterium tuberculosis phosphoserine phosphatase. J Biol Chem; 289(36):25149-65. PubMed Link

  21. Mandal RS, Das S. 2014. In silico approach towards identification of potential inhibitors of Helicobacter pylori DapE. J Biomol Struct Dyn.PubMed Link

  22. Bhattacherjee A, Mandal RS, Das S, Kundu S. 2014. Sequence and 3D structure based analysis of TNT degrading proteins in Arabidopsis thaliana. J Mol Model; 20(3):2174.PubMed Link

  23. Dhal PK, Sar P. 2014. Microbial communities in uranium mine tailings and mine water sediment from Jaduguda U mine, India: A culture independent analysis. J Environ Sci Health A Tox Hazard Subst Environ Eng; 49(6):694-709.PubMed Link

  24. [2013]

  25. Labala RK, Das S, Basak S. 2013. ASRDb: A comprehensive resource for archaeal stress response genes. Bioinformation; 9(12):650-5. PubMed Link

  26. [2012]

  27. Dasgupta A, Banerjee R, Das S, Basak S. 2012. Evolutionary perspective on the origin of Haitian cholera outbreak strain. J Biomol Struct Dyn; 30(3): 338-46. PubMed Link

  28. Banerjee R, Roy A, Ahmad F, Das S, Basak S. 2012. Evolutionary patterning of hemagglutinin gene sequence of 2009 H1N1 pandemic. J Biomol Struct Dyn; 29(4): 733-42. PubMed Link

  29. [2011]

  30. Ghosh S, Chakraborty K, Nagaraja T, Basak S, Koley H, Dutta S, Mitra U, Das S. 2011. An adhesion protein of Salmonella enterica serovar Typhi is required for pathogenesis and potential target for vaccine development. Proc Natl Acad Sci U S A; 108(8): 3348-53. PubMed Link

  31. [2009]

  32. Sinha, N. K., A. Roy, B. Das, S. Das and S. Basak. 2009. Evolutionary complexities of swine flu H1N1 gene sequences of 2009. Biochem Biophys Res Commun; 390(3): 349-51. PubMed Link

  33. Basak, S., R. Banerjee, I. Mukherjee and S. Das. 2009. Influence of domain architecture and codon usage pattern on the evolution of virulence factors of Vibrio cholerae. Biochem Biophys Res Commun; 379(4): 803-5. PubMed Link

  34. [2008]

  35. Basak, S., I. Mukherjee, M. Choudhury and S. Das. 2008. Unusual codon usage bias in lowly expressed genes of Vibrio cholerae. Bioinformation; 3(5): 213-7. PubMed Link

  36. Mukhopadhyay, P., S. Basak and T. C. Ghosh. 2008. Differential Selective Constraints Shaping Codon Usage Pattern of Housekeeping and Tissue-specific Homologous Genes of Rice and Arabidopsis. DNA Res; 15(6): 347-56. PubMed Link